![]() Moreover, no current tool includes quick yet informative comparative analyses and a first pass visualization of both annotation and analysis results. ![]() A suitable pipeline needs to perform evidence-supported gene finding as well as functional annotation and pseudogene detection up to the generation of output ready to be submitted to a public database. However, there currently are no automated eukaryotic annotation pipelines offering the required range of results to facilitate such analyses. ![]() ![]() Compared to SNP calling approaches, de novo assembly of these genomes enables researchers to additionally determine insertion, deletion and recombination events as well as to detect complex sequence diversity, such as that seen in variable multigene families. Currently available sequencing technologies enable quick and economical sequencing of many new eukaryotic parasite (apicomplexan or kinetoplastid) species or strains.
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